J3_9Y49_030

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCCUUG*CUAG

Length

26 nucleotides

Bulged bases

9Y49|1|B2|U|227, 9Y49|1|B2|C|228, 9Y49|1|B2|C|284, 9Y49|1|B2|C|285, 9Y49|1|B2|U|286

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|B2|C|223
9Y49|1|B2|A|224
9Y49|1|B2|G|225
9Y49|1|B2|A|226
9Y49|1|B2|U|227
9Y49|1|B2|C|228
9Y49|1|B2|A|229
9Y49|1|B2|A|230
9Y49|1|B2|A|231
9Y49|1|B2|A|232
9Y49|1|B2|C|233
9Y49|1|B2|C|234
9Y49|1|B2|A|235
9Y49|1|B2|A|236
9Y49|1|B2|C|237
9Y49|1|B2|C|238
*
9Y49|1|B2|G|283
9Y49|1|B2|C|284
9Y49|1|B2|C|285
9Y49|1|B2|U|286
9Y49|1|B2|U|287
9Y49|1|B2|G|288
*
9Y49|1|B2|C|295
9Y49|1|B2|U|296
9Y49|1|B2|A|297
9Y49|1|B2|G|298

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AL

40S ribosomal protein S11