J3_9Y49_031

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGG*UAAGA*UA

Length

10 nucleotides

Bulged bases

9Y49|1|B2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9Y49_031 not in the Motif Atlas

Geometric match to J3_9PN5_030

Geometric discrepancy: 0.2738

The information below is about J3_9PN5_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01633.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9Y49|1|B2|U|682
9Y49|1|B2|G|683
9Y49|1|B2|G|684
*
9Y49|1|B2|U|918
9Y49|1|B2|A|919
9Y49|1|B2|A|920
9Y49|1|B2|G|921
9Y49|1|B2|A|922
*
9Y49|1|B2|U|1022
9Y49|1|B2|A|1023

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

40S ribosomal protein S11

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain AX

40S ribosomal protein S23

Chain Ab

40S ribosomal protein S27