J3_9Y49_037
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGGA*UAC*GGGA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Y49_037 not in the Motif Atlas
- Homologous match to J3_9H3G_036
- Geometric discrepancy: 0.1449
- The information below is about J3_9H3G_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9Y49|1|B2|U|1225
9Y49|1|B2|G|1226
9Y49|1|B2|G|1227
9Y49|1|B2|A|1228
*
9Y49|1|B2|U|1530
9Y49|1|B2|A|1531
9Y49|1|B2|C|1532
*
9Y49|1|B2|G|1638
9Y49|1|B2|G|1639
9Y49|1|B2|G|1640
9Y49|1|B2|A|1641
Current chains
- Chain B2
- 18S rRNA (1786-MER)
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AQ
- 40S ribosomal protein S16
- Chain AS
- 40S ribosomal protein S18
- Chain AT
- 40S ribosomal protein S19
- Chain tR
- Transfer RNA; tRNA
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