J3_9Y49_039

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9Y49|1|B2|G|1274, 9Y49|1|B2|G|1507, 9Y49|1|B2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|B2|C|1272
9Y49|1|B2|C|1273
9Y49|1|B2|G|1274
9Y49|1|B2|G|1275
9Y49|1|B2|A|1276
9Y49|1|B2|C|1277
*
9Y49|1|B2|G|1320
9Y49|1|B2|G|1321
9Y49|1|B2|G|1322
9Y49|1|B2|U|1323
9Y49|1|B2|G|1324
*
9Y49|1|B2|U|1504
9Y49|1|B2|U|1505
9Y49|1|B2|A|1506
9Y49|1|B2|G|1507
9Y49|1|B2|A|1508
9Y49|1|B2|U|1509
9Y49|1|B2|G|1510

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AK

40S ribosomal protein S10

Chain Ad

40S ribosomal protein S29

Chain Af

40S ribosomal protein S27a

Chain Ct

Elongation factor 2