J3_9YDC_010

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

9YDC|1|A|A|1065, 9YDC|1|A|U|1094, 9YDC|1|A|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|A|U|986
9YDC|1|A|U|987
*
9YDC|1|A|A|1062
9YDC|1|A|G|1063
9YDC|1|A|A|1064
9YDC|1|A|A|1065
9YDC|1|A|G|1066
*
9YDC|1|A|C|1092
9YDC|1|A|A|1093
9YDC|1|A|U|1094
9YDC|1|A|U|1095
9YDC|1|A|U|1096
9YDC|1|A|G|1097
9YDC|1|A|A|1098

Current chains

Chain A

25S RNA

Nearby chains

Chain LI

60S ribosomal protein L7-A

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29