J3_9YDC_017
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 9YDC|1|A|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|A|A|2432
9YDC|1|A|U|2433
9YDC|1|A|U|2434
9YDC|1|A|G|2435
*
9YDC|1|A|C|2512
9YDC|1|A|U|2513
9YDC|1|A|U|2514
9YDC|1|A|A|2515
9YDC|1|A|U|2516
9YDC|1|A|U|2517
*
9YDC|1|A|A|2590
9YDC|1|A|A|2591
9YDC|1|A|G|2592
9YDC|1|A|A|2593
9YDC|1|A|C|2594
9YDC|1|A|A|2595
9YDC|1|A|U|2596
9YDC|1|A|U|2597
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LJ
- 60S ribosomal protein L8-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lk
- 60S ribosomal protein L36-A
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