J3_9YDC_025
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9YDC|1|C|U|60, 9YDC|1|C|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|C|A|44
9YDC|1|C|C|45
*
9YDC|1|C|G|58
9YDC|1|C|A|59
9YDC|1|C|U|60
9YDC|1|C|A|61
9YDC|1|C|C|62
9YDC|1|C|G|63
9YDC|1|C|U|64
*
9YDC|1|C|A|96
9YDC|1|C|A|97
9YDC|1|C|U|98
9YDC|1|C|C|99
9YDC|1|C|U|100
Current chains
- Chain C
- 8S RNA
Nearby chains
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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