J3_9YDC_033

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|E|C|1161
9YDC|1|E|C|1162
9YDC|1|E|A|1163
9YDC|1|E|G|1164
*
9YDC|1|E|C|1581
9YDC|1|E|U|1582
9YDC|1|E|A|1583
9YDC|1|E|G|1584
9YDC|1|E|U|1585
9YDC|1|E|A|1586
9YDC|1|E|A|1587
*
9YDC|1|E|U|1609
9YDC|1|E|G|1610
9YDC|1|E|A|1611
9YDC|1|E|U|1612
9YDC|1|E|U|1613
9YDC|1|E|A|1614
9YDC|1|E|C|1615
9YDC|1|E|G|1616

Current chains

Chain E

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S5

Chain SF

40S ribosomal protein S16-A

Chain SL

40S ribosomal protein S28-A