J3_9YDC_035
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9YDC|1|E|G|1199, 9YDC|1|E|G|1201, 9YDC|1|E|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|E|C|1180
9YDC|1|E|U|1181
9YDC|1|E|U|1182
9YDC|1|E|A|1183
9YDC|1|E|A|1184
9YDC|1|E|U|1185
9YDC|1|E|U|1186
9YDC|1|E|U|1187
*
9YDC|1|E|G|1198
9YDC|1|E|G|1199
9YDC|1|E|G|1200
9YDC|1|E|G|1201
9YDC|1|E|A|1202
9YDC|1|E|A|1203
9YDC|1|E|A|1204
9YDC|1|E|C|1205
9YDC|1|E|U|1206
9YDC|1|E|C|1207
9YDC|1|E|A|1208
9YDC|1|E|C|1209
*
9YDC|1|E|G|1454
9YDC|1|E|G|1455
9YDC|1|E|C|1456
9YDC|1|E|C|1457
9YDC|1|E|G|1458
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S15
- Chain SH
- 40S ribosomal protein S18-A
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
- Chain m
- Transfer RNA; tRNA
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