J3_9YDC_036
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 9YDC|1|E|A|1217, 9YDC|1|E|G|1445, 9YDC|1|E|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|E|C|1215
9YDC|1|E|C|1216
9YDC|1|E|A|1217
9YDC|1|E|G|1218
9YDC|1|E|A|1219
9YDC|1|E|C|1220
*
9YDC|1|E|G|1263
9YDC|1|E|G|1264
9YDC|1|E|G|1265
9YDC|1|E|U|1266
9YDC|1|E|G|1267
*
9YDC|1|E|U|1442
9YDC|1|E|U|1443
9YDC|1|E|A|1444
9YDC|1|E|G|1445
9YDC|1|E|A|1446
9YDC|1|E|C|1447
9YDC|1|E|G|1448
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SC
- 40S ribosomal protein S10-A
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
Coloring options: