J3_9YDC_040
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 9YDC|1|E|U|1390, 9YDC|1|E|U|1413, 9YDC|1|E|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|E|A|1336
9YDC|1|E|A|1337
9YDC|1|E|C|1338
*
9YDC|1|E|G|1386
9YDC|1|E|G|1387
9YDC|1|E|A|1388
9YDC|1|E|C|1389
9YDC|1|E|U|1390
9YDC|1|E|A|1391
*
9YDC|1|E|U|1407
9YDC|1|E|G|1408
9YDC|1|E|G|1409
9YDC|1|E|A|1410
9YDC|1|E|A|1411
9YDC|1|E|G|1412
9YDC|1|E|U|1413
9YDC|1|E|U|1414
9YDC|1|E|U|1415
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SB
- 40S ribosomal protein S5
- Chain SF
- 40S ribosomal protein S16-A
- Chain SG
- 40S ribosomal protein S17-B
- Chain SJ
- 40S ribosomal protein S20
- Chain SM
- 40S ribosomal protein S29-A
- Chain SO
- Guanine nucleotide-binding protein subunit beta-like protein
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