J3_9YDD_004
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 9YDD|1|A|U|343, 9YDD|1|A|A|351, 9YDD|1|C|U|23
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_004 not in the Motif Atlas
- Homologous match to J3_9PN5_004
- Geometric discrepancy: 0.0374
- The information below is about J3_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.4
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|C|340
9YDD|1|A|G|341
9YDD|1|A|A|342
9YDD|1|A|U|343
9YDD|1|A|A|344
9YDD|1|A|G|345
9YDD|1|A|C|346
9YDD|1|A|G|347
9YDD|1|A|A|348
9YDD|1|A|A|349
9YDD|1|A|C|350
9YDD|1|A|A|351
9YDD|1|A|A|352
9YDD|1|A|G|353
9YDD|1|A|U|354
9YDD|1|A|A|355
9YDD|1|A|C|356
*
9YDD|1|A|G|363
9YDD|1|A|G|364
9YDD|1|A|A|365
9YDD|1|A|A|366
9YDD|1|A|A|367
9YDD|1|A|G|368
*
9YDD|1|C|C|21
9YDD|1|C|U|22
9YDD|1|C|U|23
9YDD|1|C|G|24
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: