J3_9YDD_013
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_013 not in the Motif Atlas
- Homologous match to J3_9PN5_014
- Geometric discrepancy: 0.052
- The information below is about J3_9PN5_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9YDD|1|A|U|1526
9YDD|1|A|C|1527
9YDD|1|A|G|1528
9YDD|1|A|A|1529
9YDD|1|A|U|1530
9YDD|1|A|C|1531
*
9YDD|1|A|G|1591
9YDD|1|A|G|1592
9YDD|1|A|A|1593
9YDD|1|A|A|1594
9YDD|1|A|U|1595
*
9YDD|1|A|A|1612
9YDD|1|A|A|1613
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LZ
- 60S ribosomal protein L25
- Chain Li
- 60S ribosomal protein L34-A
- Chain Lm
- 60S ribosomal protein L38
- Chain Ln
- 60S ribosomal protein L39
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