J3_9YDD_025
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 9YDD|1|C|U|60, 9YDD|1|C|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_025 not in the Motif Atlas
- Homologous match to J3_9PN5_026
- Geometric discrepancy: 0.0492
- The information below is about J3_9PN5_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.4
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|C|A|44
9YDD|1|C|C|45
*
9YDD|1|C|G|58
9YDD|1|C|A|59
9YDD|1|C|U|60
9YDD|1|C|A|61
9YDD|1|C|C|62
9YDD|1|C|G|63
9YDD|1|C|U|64
*
9YDD|1|C|A|96
9YDD|1|C|A|97
9YDD|1|C|U|98
9YDD|1|C|C|99
9YDD|1|C|U|100
Current chains
- Chain C
- 8S RNA
Nearby chains
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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