J3_9YDD_026
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDD_026 not in the Motif Atlas
- Geometric match to J3_9SUM_026
- Geometric discrepancy: 0.0629
- The information below is about J3_9SUM_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|A|41
9YDD|1|E|G|42
*
9YDD|1|E|C|433
9YDD|1|E|G|434
9YDD|1|E|C|435
9YDD|1|E|A|436
9YDD|1|E|A|437
9YDD|1|E|A|438
9YDD|1|E|U|439
*
9YDD|1|E|A|464
9YDD|1|E|G|465
9YDD|1|E|U|466
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sc
- 40S ribosomal protein S23-A
Coloring options: