J3_9YDE_006
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 9YDE|1|A|A|398, 9YDE|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDE|1|A|A|369
9YDE|1|A|U|370
9YDE|1|A|G|371
9YDE|1|A|A|372
9YDE|1|A|A|373
9YDE|1|A|A|374
9YDE|1|A|A|375
9YDE|1|A|G|376
9YDE|1|A|A|377
9YDE|1|A|A|378
9YDE|1|A|C|379
*
9YDE|1|A|G|390
9YDE|1|A|A|391
9YDE|1|A|G|392
9YDE|1|A|U|393
9YDE|1|A|G|394
9YDE|1|A|A|395
9YDE|1|A|A|396
9YDE|1|A|A|397
9YDE|1|A|A|398
9YDE|1|A|A|399
9YDE|1|A|G|400
9YDE|1|A|U|401
9YDE|1|A|A|402
9YDE|1|A|C|403
9YDE|1|A|G|404
*
9YDE|1|C|C|19
9YDE|1|C|U|20
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LR
- 60S ribosomal protein L17-A
- Chain La
- 60S ribosomal protein L26-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: