J3_9YDE_009
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AUAG*CGUAG*UCGAAU
- Length
- 15 nucleotides
- Bulged bases
- 9YDE|1|A|A|896
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDE|1|A|A|828
9YDE|1|A|U|829
9YDE|1|A|A|830
9YDE|1|A|G|831
*
9YDE|1|A|C|863
9YDE|1|A|G|864
9YDE|1|A|U|865
9YDE|1|A|A|866
9YDE|1|A|G|867
*
9YDE|1|A|U|892
9YDE|1|A|C|893
9YDE|1|A|G|894
9YDE|1|A|A|895
9YDE|1|A|A|896
9YDE|1|A|U|897
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LD
- 60S ribosomal protein L2-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Li
- 60S ribosomal protein L34-A
Coloring options: