J3_9YDE_010

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

9YDE|1|A|A|1065, 9YDE|1|A|U|1094, 9YDE|1|A|U|1095

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|U|986
9YDE|1|A|U|987
*
9YDE|1|A|A|1062
9YDE|1|A|G|1063
9YDE|1|A|A|1064
9YDE|1|A|A|1065
9YDE|1|A|G|1066
*
9YDE|1|A|C|1092
9YDE|1|A|A|1093
9YDE|1|A|U|1094
9YDE|1|A|U|1095
9YDE|1|A|U|1096
9YDE|1|A|G|1097
9YDE|1|A|A|1098

Current chains

Chain A

25S RNA

Nearby chains

Chain LI

60S ribosomal protein L7-A

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29