J3_9YDE_011

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

9YDE|1|A|A|1482, 9YDE|1|A|U|1484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|U|1479
9YDE|1|A|G|1480
9YDE|1|A|A|1481
9YDE|1|A|A|1482
9YDE|1|A|G|1483
9YDE|1|A|U|1484
9YDE|1|A|G|1485
*
9YDE|1|A|C|1857
9YDE|1|A|A|1858
9YDE|1|A|A|1859
*
9YDE|1|A|U|1871
9YDE|1|A|C|1872
9YDE|1|A|U|1873
9YDE|1|A|A|1874

Current chains

Chain A

25S RNA

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain Li

60S ribosomal protein L34-A