J3_9YDE_019

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

9YDE|1|A|C|2760, 9YDE|1|A|C|2797

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|A|G|2651
9YDE|1|A|U|2652
9YDE|1|A|C|2653
*
9YDE|1|A|G|2754
9YDE|1|A|C|2755
9YDE|1|A|C|2756
9YDE|1|A|U|2757
9YDE|1|A|A|2758
9YDE|1|A|U|2759
9YDE|1|A|C|2760
9YDE|1|A|G|2761
9YDE|1|A|A|2762
9YDE|1|A|U|2763
9YDE|1|A|C|2764
9YDE|1|A|C|2765
*
9YDE|1|A|G|2793
9YDE|1|A|G|2794
9YDE|1|A|U|2795
9YDE|1|A|G|2796
9YDE|1|A|C|2797
9YDE|1|A|C|2798

Current chains

Chain A

25S RNA

Nearby chains

Chain LS

60S ribosomal protein L18-A

Chain LV

60S ribosomal protein L21-A

Chain Lc

60S ribosomal protein L28

Chain Lq

60S ribosomal protein L42-A