J3_9YDE_028
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 9YDE|1|E|U|864
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YDE_028 not in the Motif Atlas
- Geometric match to J3_9PN5_030
- Geometric discrepancy: 0.0882
- The information below is about J3_9PN5_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9YDE|1|E|U|633
9YDE|1|E|G|634
9YDE|1|E|A|635
*
9YDE|1|E|U|861
9YDE|1|E|A|862
9YDE|1|E|A|863
9YDE|1|E|U|864
9YDE|1|E|A|865
*
9YDE|1|E|U|965
9YDE|1|E|A|966
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SU
- 40S ribosomal protein S7-A
- Chain SX
- 40S ribosomal protein S11-A
- Chain SY
- 40S ribosomal protein S13
- Chain Sb
- 40S ribosomal protein S22-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sf
- 40S ribosomal protein S27-A
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