J3_9YDE_032

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|E|C|1161
9YDE|1|E|C|1162
9YDE|1|E|A|1163
9YDE|1|E|G|1164
*
9YDE|1|E|C|1581
9YDE|1|E|U|1582
9YDE|1|E|A|1583
9YDE|1|E|G|1584
9YDE|1|E|U|1585
9YDE|1|E|A|1586
9YDE|1|E|A|1587
*
9YDE|1|E|U|1609
9YDE|1|E|G|1610
9YDE|1|E|A|1611
9YDE|1|E|U|1612
9YDE|1|E|U|1613
9YDE|1|E|A|1614
9YDE|1|E|C|1615
9YDE|1|E|G|1616

Current chains

Chain E

18S rRNA

Nearby chains

Chain SB

40S ribosomal protein S5

Chain SF

40S ribosomal protein S16-A

Chain SL

40S ribosomal protein S28-A