J3_9YDE_035

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

9YDE|1|E|A|1217, 9YDE|1|E|G|1445, 9YDE|1|E|C|1447

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDE|1|E|C|1215
9YDE|1|E|C|1216
9YDE|1|E|A|1217
9YDE|1|E|G|1218
9YDE|1|E|A|1219
9YDE|1|E|C|1220
*
9YDE|1|E|G|1263
9YDE|1|E|G|1264
9YDE|1|E|G|1265
9YDE|1|E|U|1266
9YDE|1|E|G|1267
*
9YDE|1|E|U|1442
9YDE|1|E|U|1443
9YDE|1|E|A|1444
9YDE|1|E|G|1445
9YDE|1|E|A|1446
9YDE|1|E|C|1447
9YDE|1|E|G|1448

Current chains

Chain E

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S10-A

Chain SM

40S ribosomal protein S29-A

Chain SN

Ubiquitin-40S ribosomal protein S31