J3_9YPG_002

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9YPG|1|5|C|216, 9YPG|1|5|C|217, 9YPG|1|5|A|218, 9YPG|1|5|G|219, 9YPG|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|C|196
9YPG|1|5|A|197
9YPG|1|5|A|198
9YPG|1|5|G|199
*
9YPG|1|5|C|215
9YPG|1|5|C|216
9YPG|1|5|C|217
9YPG|1|5|A|218
9YPG|1|5|G|219
9YPG|1|5|C|220
9YPG|1|5|C|221
9YPG|1|5|C|222
9YPG|1|5|G|223
9YPG|1|5|U|224
9YPG|1|5|G|225
9YPG|1|5|G|226
9YPG|1|5|A|227
9YPG|1|5|C|228
*
9YPG|1|5|G|240
9YPG|1|5|G|241
9YPG|1|5|U|242
9YPG|1|5|A|243
9YPG|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24