J3_9YPG_008

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9YPG|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|5|G|1545
9YPG|1|5|C|1546
9YPG|1|5|A|1547
9YPG|1|5|G|1548
*
9YPG|1|5|C|1580
9YPG|1|5|G|1581
9YPG|1|5|U|1582
9YPG|1|5|A|1583
9YPG|1|5|G|1584
*
9YPG|1|5|U|1609
9YPG|1|5|C|1610
9YPG|1|5|C|1611
9YPG|1|5|G|1612
9YPG|1|5|A|1613
9YPG|1|5|C|1614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain g

Large ribosomal subunit protein eL34

Chain p

eL43