J3_9YPG_036

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAAUUU*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

9YPG|1|9|G|1256, 9YPG|1|9|A|1258, 9YPG|1|9|A|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|9|C|1237
9YPG|1|9|U|1238
9YPG|1|9|U|1239
9YPG|1|9|A|1240
9YPG|1|9|A|1241
9YPG|1|9|U|1242
9YPG|1|9|U|1243
9YPG|1|9|U|1244
*
9YPG|1|9|G|1255
9YPG|1|9|G|1256
9YPG|1|9|G|1257
9YPG|1|9|A|1258
9YPG|1|9|A|1259
9YPG|1|9|A|1260
9YPG|1|9|C|1261
9YPG|1|9|C|1262
9YPG|1|9|U|1263
9YPG|1|9|C|1264
9YPG|1|9|A|1265
9YPG|1|9|C|1266
*
9YPG|1|9|G|1516
9YPG|1|9|G|1517
9YPG|1|9|C|1518
9YPG|1|9|U|1519
9YPG|1|9|G|1520

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 12

Transfer RNA; tRNA

Chain PP

uS19

Chain SS

uS13

Chain UU

uS10

Chain dd

eS29