J3_9YPG_037

3D structure

PDB id

9YPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the GTPase activation-like state, Structure III

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9YPG|1|9|G|1507, 9YPG|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPG|1|9|C|1272
9YPG|1|9|C|1273
9YPG|1|9|G|1274
9YPG|1|9|G|1275
9YPG|1|9|A|1276
9YPG|1|9|C|1277
*
9YPG|1|9|G|1320
9YPG|1|9|G|1321
9YPG|1|9|G|1322
9YPG|1|9|U|1323
9YPG|1|9|G|1324
*
9YPG|1|9|U|1504
9YPG|1|9|U|1505
9YPG|1|9|A|1506
9YPG|1|9|G|1507
9YPG|1|9|A|1508
9YPG|1|9|U|1509
9YPG|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

Small ribosomal subunit protein eS10

Chain dd

eS29

Chain ff

Ribosomal protein S27a