J3_9YPO_002

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9YPO|1|5|C|216, 9YPO|1|5|C|217, 9YPO|1|5|A|218, 9YPO|1|5|G|219, 9YPO|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|196
9YPO|1|5|A|197
9YPO|1|5|A|198
9YPO|1|5|G|199
*
9YPO|1|5|C|215
9YPO|1|5|C|216
9YPO|1|5|C|217
9YPO|1|5|A|218
9YPO|1|5|G|219
9YPO|1|5|C|220
9YPO|1|5|C|221
9YPO|1|5|C|222
9YPO|1|5|G|223
9YPO|1|5|U|224
9YPO|1|5|G|225
9YPO|1|5|G|226
9YPO|1|5|A|227
9YPO|1|5|C|228
*
9YPO|1|5|G|240
9YPO|1|5|G|241
9YPO|1|5|U|242
9YPO|1|5|A|243
9YPO|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Y

uL24