J3_9YPO_003
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9YPO|1|5|U|354, 9YPO|1|5|A|362, 9YPO|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|C|351
9YPO|1|5|G|352
9YPO|1|5|A|353
9YPO|1|5|U|354
9YPO|1|5|A|355
9YPO|1|5|G|356
9YPO|1|5|U|357
9YPO|1|5|C|358
9YPO|1|5|A|359
9YPO|1|5|A|360
9YPO|1|5|C|361
9YPO|1|5|A|362
9YPO|1|5|A|363
9YPO|1|5|G|364
9YPO|1|5|U|365
9YPO|1|5|A|366
9YPO|1|5|C|367
*
9YPO|1|5|G|374
9YPO|1|5|G|375
9YPO|1|5|A|376
9YPO|1|5|A|377
9YPO|1|5|A|378
9YPO|1|5|G|379
*
9YPO|1|8|C|21
9YPO|1|8|U|22
9YPO|1|8|C|23
9YPO|1|8|G|24
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- uL24
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
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