J3_9YPO_008

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9YPO|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|G|1545
9YPO|1|5|C|1546
9YPO|1|5|A|1547
9YPO|1|5|G|1548
*
9YPO|1|5|C|1580
9YPO|1|5|G|1581
9YPO|1|5|U|1582
9YPO|1|5|A|1583
9YPO|1|5|G|1584
*
9YPO|1|5|U|1609
9YPO|1|5|C|1610
9YPO|1|5|C|1611
9YPO|1|5|G|1612
9YPO|1|5|A|1613
9YPO|1|5|C|1614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain g

Large ribosomal subunit protein eL34

Chain p

eL43