J3_9YPO_009
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 9YPO|1|5|A|1805, 9YPO|1|5|U|1834
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|U|1726
9YPO|1|5|U|1727
*
9YPO|1|5|A|1802
9YPO|1|5|G|1803
9YPO|1|5|A|1804
9YPO|1|5|A|1805
9YPO|1|5|G|1806
*
9YPO|1|5|C|1832
9YPO|1|5|G|1833
9YPO|1|5|U|1834
9YPO|1|5|G|1835
9YPO|1|5|G|1836
9YPO|1|5|A|1837
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain K
- 60S ribosomal protein L7
- Chain T
- eL21
- Chain b
- Large ribosomal subunit protein eL29
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