J3_9YPO_024

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9YPO|1|5|U|4989, 9YPO|1|5|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|5|C|4970
9YPO|1|5|A|4971
9YPO|1|5|U|4972
*
9YPO|1|5|G|4986
9YPO|1|5|C|4987
9YPO|1|5|U|4988
9YPO|1|5|U|4989
9YPO|1|5|C|4990
9YPO|1|5|U|4991
*
9YPO|1|5|A|5060
9YPO|1|5|A|5061
9YPO|1|5|G|5062
9YPO|1|5|G|5063

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22

Chain d

eL31