J3_9YPO_030
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGA*UUAAGAG*CAUUA
- Length
- 16 nucleotides
- Bulged bases
- 9YPO|1|9|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|9|U|682
9YPO|1|9|G|683
9YPO|1|9|G|684
9YPO|1|9|A|685
*
9YPO|1|9|U|917
9YPO|1|9|U|918
9YPO|1|9|A|919
9YPO|1|9|A|920
9YPO|1|9|G|921
9YPO|1|9|A|922
9YPO|1|9|G|923
*
9YPO|1|9|C|1019
9YPO|1|9|A|1020
9YPO|1|9|U|1021
9YPO|1|9|U|1022
9YPO|1|9|A|1023
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain HH
- 40S ribosomal protein S7
- Chain LL
- Ribosomal protein S11
- Chain NN
- Ribosomal protein S13
- Chain WW
- Ribosomal protein S15a
- Chain XX
- uS12
- Chain bb
- 40S ribosomal protein S27
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