J3_9YPO_037

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9YPO|1|9|G|1507, 9YPO|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|C|1272
9YPO|1|9|C|1273
9YPO|1|9|G|1274
9YPO|1|9|G|1275
9YPO|1|9|A|1276
9YPO|1|9|C|1277
*
9YPO|1|9|G|1320
9YPO|1|9|G|1321
9YPO|1|9|G|1322
9YPO|1|9|U|1323
9YPO|1|9|G|1324
*
9YPO|1|9|U|1504
9YPO|1|9|U|1505
9YPO|1|9|A|1506
9YPO|1|9|G|1507
9YPO|1|9|A|1508
9YPO|1|9|U|1509
9YPO|1|9|G|1510

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

Small ribosomal subunit protein eS10

Chain dd

eS29

Chain ff

Ribosomal protein S27a