J3_9YPS_006

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

9YPS|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|5|C|451
9YPS|1|5|A|452
9YPS|1|5|G|453
9YPS|1|5|U|454
9YPS|1|5|C|455
*
9YPS|1|5|G|701
9YPS|1|5|U|702
9YPS|1|5|G|703
9YPS|1|5|C|704
9YPS|1|5|G|705
*
9YPS|1|5|C|1292
9YPS|1|5|G|1293
9YPS|1|5|A|1294
9YPS|1|5|U|1295
9YPS|1|5|G|1296

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

Ribosomal protein L32

Chain f

eL33

Chain r

eL28