J3_9YPS_027

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YPS_027 not in the Motif Atlas

Geometric match to J3_9H3G_028

Geometric discrepancy: 0.0552

The information below is about J3_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9YPS|1|9|A|40
9YPS|1|9|G|41
*
9YPS|1|9|C|481
9YPS|1|9|G|482
9YPS|1|9|C|483
9YPS|1|9|A|484
9YPS|1|9|A|485
9YPS|1|9|A|486
9YPS|1|9|U|487
*
9YPS|1|9|A|512
9YPS|1|9|G|513
9YPS|1|9|U|514

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

uS12

Chain jj

GTP-binding protein 1