J3_9YPS_033

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

9YPS|1|9|C|1138, 9YPS|1|9|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|C|1094
9YPS|1|9|C|1095
9YPS|1|9|G|1096
*
9YPS|1|9|U|1136
9YPS|1|9|U|1137
9YPS|1|9|C|1138
9YPS|1|9|C|1139
9YPS|1|9|G|1140
*
9YPS|1|9|C|1147
9YPS|1|9|A|1148
9YPS|1|9|A|1149
9YPS|1|9|A|1150
9YPS|1|9|G|1151

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain AA

uS2 (SA)

Chain VV

eS21

Chain WW

Ribosomal protein S15a

Chain aa

40S ribosomal protein S26

Chain bb

40S ribosomal protein S27