J3_9YPS_035

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|U|1225
9YPS|1|9|G|1226
9YPS|1|9|G|1227
9YPS|1|9|A|1228
*
9YPS|1|9|U|1530
9YPS|1|9|A|1531
9YPS|1|9|C|1532
*
9YPS|1|9|G|1638
9YPS|1|9|G|1639
9YPS|1|9|A|1640
9YPS|1|9|A|1641

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA

Chain 13

Transfer RNA; tRNA

Chain FF

Ribosomal protein S5

Chain QQ

uS9

Chain SS

uS13

Chain TT

eS19