J3_9YPT_007

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9YPT|1|5|A|1534, 9YPT|1|5|G|1641, 9YPT|1|5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|U|1531
9YPT|1|5|G|1532
9YPT|1|5|A|1533
9YPT|1|5|A|1534
9YPT|1|5|C|1535
9YPT|1|5|U|1536
9YPT|1|5|A|1537
*
9YPT|1|5|U|1622
9YPT|1|5|A|1623
9YPT|1|5|G|1624
*
9YPT|1|5|C|1640
9YPT|1|5|G|1641
9YPT|1|5|A|1642
9YPT|1|5|A|1643

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37

Chain l

eL39