J3_9YPT_007
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9YPT|1|5|A|1534, 9YPT|1|5|G|1641, 9YPT|1|5|A|1642
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPT_007 not in the Motif Atlas
- Homologous match to J3_9PN5_008
- Geometric discrepancy: 0.0551
- The information below is about J3_9PN5_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YPT|1|5|U|1531
9YPT|1|5|G|1532
9YPT|1|5|A|1533
9YPT|1|5|A|1534
9YPT|1|5|C|1535
9YPT|1|5|U|1536
9YPT|1|5|A|1537
*
9YPT|1|5|U|1622
9YPT|1|5|A|1623
9YPT|1|5|G|1624
*
9YPT|1|5|C|1640
9YPT|1|5|G|1641
9YPT|1|5|A|1642
9YPT|1|5|A|1643
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
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