J3_9YPT_013

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|U|2440
9YPT|1|5|C|2441
9YPT|1|5|G|2442
9YPT|1|5|G|2443
9YPT|1|5|U|2444
9YPT|1|5|C|2445
*
9YPT|1|5|G|2515
9YPT|1|5|G|2516
9YPT|1|5|A|2517
9YPT|1|5|G|2518
9YPT|1|5|U|2519
*
9YPT|1|5|A|2536
9YPT|1|5|A|2537

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

eL23

Chain g

Large ribosomal subunit protein eL34

Chain k

eL38

Chain l

eL39