J3_9YPT_013
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPT_013 not in the Motif Atlas
- Homologous match to J3_8GLP_030
- Geometric discrepancy: 0.0619
- The information below is about J3_8GLP_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.4
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
9YPT|1|5|U|2440
9YPT|1|5|C|2441
9YPT|1|5|G|2442
9YPT|1|5|G|2443
9YPT|1|5|U|2444
9YPT|1|5|C|2445
*
9YPT|1|5|G|2515
9YPT|1|5|G|2516
9YPT|1|5|A|2517
9YPT|1|5|G|2518
9YPT|1|5|U|2519
*
9YPT|1|5|A|2536
9YPT|1|5|A|2537
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- eL23
- Chain g
- Large ribosomal subunit protein eL34
- Chain k
- eL38
- Chain l
- eL39
Coloring options: