J3_9YPT_021
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9YPT|1|5|A|4280, 9YPT|1|5|A|4282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9YPT_021 not in the Motif Atlas
- Homologous match to J3_8GLP_009
- Geometric discrepancy: 0.0534
- The information below is about J3_8GLP_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.4
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YPT|1|5|C|4241
9YPT|1|5|U|4242
9YPT|1|5|C|4243
*
9YPT|1|5|G|4267
9YPT|1|5|A|4268
9YPT|1|5|G|4269
*
9YPT|1|5|C|4278
9YPT|1|5|A|4279
9YPT|1|5|A|4280
9YPT|1|5|A|4281
9YPT|1|5|A|4282
9YPT|1|5|G|4283
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL18
- Chain J
- Ribosomal protein L11
- Chain T
- eL21
- Chain o
- Large ribosomal subunit protein eL42
Coloring options: