J3_9YPT_022

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9YPT|1|5|A|4464, 9YPT|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|U|4463
9YPT|1|5|A|4464
9YPT|1|5|U|4465
9YPT|1|5|C|4466
*
9YPT|1|5|G|4491
9YPT|1|5|U|4492
9YPT|1|5|U|4493
*
9YPT|1|5|A|4507
9YPT|1|5|C|4508
9YPT|1|5|U|4509
9YPT|1|5|A|4510
9YPT|1|5|A|4511
9YPT|1|5|U|4512
9YPT|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23