J3_9YPV_005
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9YPV|1|5|G|409, 9YPV|1|5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|5|U|380
9YPV|1|5|U|381
9YPV|1|5|G|382
9YPV|1|5|A|383
9YPV|1|5|A|384
9YPV|1|5|A|385
9YPV|1|5|A|386
9YPV|1|5|G|387
9YPV|1|5|A|388
9YPV|1|5|A|389
9YPV|1|5|C|390
*
9YPV|1|5|G|401
9YPV|1|5|A|402
9YPV|1|5|G|403
9YPV|1|5|U|404
9YPV|1|5|U|405
9YPV|1|5|C|406
9YPV|1|5|A|407
9YPV|1|5|A|408
9YPV|1|5|G|409
9YPV|1|5|A|410
9YPV|1|5|G|411
9YPV|1|5|G|412
9YPV|1|5|G|413
9YPV|1|5|C|414
9YPV|1|5|G|415
*
9YPV|1|8|C|19
9YPV|1|8|A|20
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- Large ribosomal subunit protein uL22
- Chain Y
- uL24
- Chain l
- eL39
Coloring options: