J3_9YPV_008

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

9YPV|1|5|A|1613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|G|1545
9YPV|1|5|C|1546
9YPV|1|5|A|1547
9YPV|1|5|G|1548
*
9YPV|1|5|C|1580
9YPV|1|5|G|1581
9YPV|1|5|U|1582
9YPV|1|5|A|1583
9YPV|1|5|G|1584
*
9YPV|1|5|U|1609
9YPV|1|5|C|1610
9YPV|1|5|C|1611
9YPV|1|5|G|1612
9YPV|1|5|A|1613
9YPV|1|5|C|1614

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain R

Ribosomal protein L19

Chain g

Large ribosomal subunit protein eL34

Chain p

eL43