J3_9YPV_020
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9YPV|1|5|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|5|G|4228
9YPV|1|5|U|4229
9YPV|1|5|C|4230
*
9YPV|1|5|G|4331
9YPV|1|5|C|4332
9YPV|1|5|C|4333
9YPV|1|5|U|4334
9YPV|1|5|C|4335
9YPV|1|5|A|4336
9YPV|1|5|C|4337
9YPV|1|5|G|4338
9YPV|1|5|A|4339
9YPV|1|5|U|4340
9YPV|1|5|C|4341
9YPV|1|5|C|4342
*
9YPV|1|5|G|4370
9YPV|1|5|G|4371
9YPV|1|5|U|4372
9YPV|1|5|G|4373
9YPV|1|5|U|4374
9YPV|1|5|C|4375
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 11
- Transfer RNA; tRNA
- Chain Q
- Ribosomal protein L18
- Chain T
- eL21
- Chain a
- 60S ribosomal protein L27a
- Chain o
- Large ribosomal subunit protein eL42
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