J3_9YPV_036
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9YPV|1|9|G|1256, 9YPV|1|9|A|1258, 9YPV|1|9|A|1260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|9|C|1237
9YPV|1|9|U|1238
9YPV|1|9|U|1239
9YPV|1|9|A|1240
9YPV|1|9|A|1241
9YPV|1|9|U|1242
9YPV|1|9|U|1243
9YPV|1|9|U|1244
*
9YPV|1|9|G|1255
9YPV|1|9|G|1256
9YPV|1|9|G|1257
9YPV|1|9|A|1258
9YPV|1|9|A|1259
9YPV|1|9|A|1260
9YPV|1|9|C|1261
9YPV|1|9|C|1262
9YPV|1|9|U|1263
9YPV|1|9|C|1264
9YPV|1|9|A|1265
9YPV|1|9|C|1266
*
9YPV|1|9|G|1516
9YPV|1|9|G|1517
9YPV|1|9|C|1518
9YPV|1|9|U|1519
9YPV|1|9|G|1520
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- eS29
Coloring options: