J3_9YPW_006

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|C|451
9YPW|1|5|A|452
9YPW|1|5|G|453
9YPW|1|5|U|454
9YPW|1|5|C|455
*
9YPW|1|5|G|701
9YPW|1|5|U|702
9YPW|1|5|G|703
9YPW|1|5|C|704
9YPW|1|5|G|705
*
9YPW|1|5|C|1292
9YPW|1|5|G|1293
9YPW|1|5|A|1294
9YPW|1|5|U|1295
9YPW|1|5|G|1296

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain e

Ribosomal protein L32

Chain f

eL33