J3_9YPW_010

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9YPW_010 not in the Motif Atlas

Geometric match to J3_6PRV_001

Geometric discrepancy: 0.1312

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.2

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

4

Unit IDs

9YPW|1|5|G|1969
9YPW|1|5|A|1970
9YPW|1|5|U|1971
*
9YPW|1|5|G|1995
9YPW|1|5|C|1996
9YPW|1|5|U|1997
9YPW|1|5|A|1998
9YPW|1|5|A|1999
9YPW|1|5|G|2000
9YPW|1|5|G|2001
*
9YPW|1|5|C|2016
9YPW|1|5|A|2017
9YPW|1|5|C|2018

Current chains

Chain 5

28S ribosomal RNA

Nearby chains