J3_9YPW_022

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9YPW|1|5|A|4464, 9YPW|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|U|4463
9YPW|1|5|A|4464
9YPW|1|5|U|4465
9YPW|1|5|C|4466
*
9YPW|1|5|G|4491
9YPW|1|5|U|4492
9YPW|1|5|U|4493
*
9YPW|1|5|A|4507
9YPW|1|5|C|4508
9YPW|1|5|U|4509
9YPW|1|5|A|4510
9YPW|1|5|A|4511
9YPW|1|5|U|4512
9YPW|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Ribosomal protein L23