J3_9YPY_023

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9YPY|1|5|A|4464, 9YPY|1|5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|U|4463
9YPY|1|5|A|4464
9YPY|1|5|U|4465
9YPY|1|5|C|4466
*
9YPY|1|5|G|4491
9YPY|1|5|U|4492
9YPY|1|5|U|4493
*
9YPY|1|5|A|4507
9YPY|1|5|C|4508
9YPY|1|5|U|4509
9YPY|1|5|A|4510
9YPY|1|5|A|4511
9YPY|1|5|U|4512
9YPY|1|5|A|4513

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Ribosomal protein L23